The exit status of the task that caused the workflow execution to fail was: null.
The full error message was:
Error executing process > 'NFCORE_CHIPSEQ:CHIPSEQ:FILTER_BAM_BAMTOOLS:BAM_FILTER (Med1_VCAP_Daro_REP2)'
Caused by:
Process `NFCORE_CHIPSEQ:CHIPSEQ:FILTER_BAM_BAMTOOLS:BAM_FILTER (Med1_VCAP_Daro_REP2)` terminated for an unknown reason -- Likely it has been terminated by the external system
Command executed:
samtools view \
-F 0x004 \
-F 0x0400 \
-q 1 \
-L genome.include_regions.bed \
-b Med1_VCAP_Daro_REP2.mLb.mkD.sorted.bam \
| bamtools filter \
-out Med1_VCAP_Daro_REP2.mLb.noPublish.bam \
-script bamtools_filter_se.json
cat <<-END_VERSIONS > versions.yml
"NFCORE_CHIPSEQ:CHIPSEQ:FILTER_BAM_BAMTOOLS:BAM_FILTER":
samtools: $(echo $(samtools --version 2>&1) | sed 's/^.*samtools //; s/Using.*$//')
bamtools: $(echo $(bamtools --version 2>&1) | sed 's/^.*bamtools //; s/Part .*$//')
END_VERSIONS
Command exit status:
-
Command output:
(empty)
Work dir:
/input/data/work/dd/583b0bb80a4b0f7ce2d9205cd06c13
Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`
nextflow run /input/chipseq -profile test_full -c /experiments/experiment/chipseq/nextflow.config -c /experiments/experiment/nextflow_cws.config -c /experiments/experiment/nextflow_ceph.config73413072355e71512cca3175a986f037f004f1a3-875e-41dd-b28f-3306a5358235These plots give an overview of the distribution of resource usage for each process.
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